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Reconstruction of Simultaneous Multi-Slice MRI Data by Combining Virtual Conjugate Coil Technology and Convolutional Neural Network
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WANG Wan-ting, SU Shi, JIA Sen, LIANG Dong, WANG Hai-feng
Chinese Journal of Magnetic Resonance, 2020, 37(4): 407-421.
DOI: 10.11938/cjmr20202800
This paper proposes an image reconstruction method for simultaneous multi-slice imaging (SMS) by combining the virtual conjugate coil (VCC) technology and robust artificial-neural-networks for k -space interpolation (RAKI). This method can effectively improve the reconstruction quality, and is named VIRGINIA (VIRtual conjuGate coIls Neural-networks InterpolAtion). VIRGINIA utilizes the complex conjugate symmetry property of the virtual coil concept to generate virtual coil data for training, and obtains better image quality by applying the trained network to the original aliased SMS data. With experimental data, the VIRGINIA method was compared to other reconstruction methods (i.e., RAKI only and slice-GRAPPA) in terms of quantitative indices such as structural similarity index (SSIM ), peak signal-to-noise ratio (PSNR ) and root mean square error (RMSE ). The results demonstrated that, under some certain slice-acceleration factors, VIRGINIA produced better reconstruction quality than those obtainable by Slice-GRAPPA and RAKI.
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MRI-Based Morphological Quantification of Developmental Dysplasia of the Hip in Children
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WU Ming-di, FENG Jie, JIA Hui-hui, WU Ji-zhi, ZHANG Xin, CHANG Yan, YANG Xiao-dong, SHENG Mao
Chinese Journal of Magnetic Resonance, 2020, 37(4): 434-446.
DOI: 10.11938/cjmr20202804
Developmental dysplasia of the hip (DDH) is a common hip disease that seriously affects children's growth, impairing limb development and quality of life. Early diagnosis and treatment of DDH are crucial. Magnetic resonance imaging provides rich morphological information of the hip during development. Clinically DDH is usually diagnosed by visual inspection of the medical images, thus requiring high professional expertise of the doctors. In this work, a quantitative morphological evaluation method for examining the hip images and diagnosing DDH in children is proposed. This method evaluates morphological parameters of the hip quantitatively by automatically measuring the morphological parameters relevant to DDH pathological changes. The magnetic resonance images were first preprocessed, followed by segmentation of the femur and pelvis. A three-dimensional (3D) model of the hip joint was then reconstructed, which was then used to measure the center-edge angle (CEA ), acetabular index (AI ) and femoral neck anteversion (FNA )'s automatically with algorithms such as thickness search, 3D Hough transform, and least squares fitting. The quantitative morphological evaluation method developed may have great value in preliminary screening of DDH in children, formulation of surgical plans, and longitudinal follow-ups after DDH surgery.
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Segmentation of Prostate Magnetic Resonance Images Based on an Improved Distance Regularized Level Set Evolution (DRLSE) Model
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ZHU Ze-hua, YAN Shi-ju, RUAN Yuan, HAN Bang-min
Chinese Journal of Magnetic Resonance, 2020, 37(4): 447-455.
DOI: 10.11938/cjmr20192786
Segmentation of prostate magnetic resonance images is of great significance in the interventional diagnosis and treatment of prostate diseases. In this work, the conventional distance regularized level set evolution (DRLSE) model is improved and applied to prostate segmentation. In magnetic resonance image, the prostate boundary near the bladder is often blurred, while that near the urethra is clear, resulting in a poor performance for the traditional gradient information indicator function. In this study, two indicator functions were used to control the evolution of boundary in the clear segment and blurred segment, respectively, to achieve better segmentation. In addition, an energy check term was added to the external energy function to prevent evolution from stopping at a false boundary. This modification could drive the level set to move to regions with large gray level fluctuation and stop evolution at a blurred boundary. Experimental results demonstrated that the performance of prostate segmentation was satisfactory, judging from the Dice similarity coefficient (DSC ) which reached an average of 96%.
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Automatic Segmentation of Right Ventricle in Cine Cardiac Magnetic Resonance Image Based on a Dense and Multi-Scale U-net Method
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LIU Peng, ZHONG Yu-min, WANG Li-jia
Chinese Journal of Magnetic Resonance, 2020, 37(4): 456-468.
DOI: 10.11938/cjmr20192794
Evaluating cardiac function from magnetic resonance images requires segmentation of the right ventricle (RV). The traditional segmentation methods, however, are often ineffective due to the complex structure of RV. Herein, a dense and multi-scale U-net (DMU-net) method is proposed to segment RV. Fifty six datasets were preprocessed, and the steps included normalization, enhancement and region of interest (ROI) extraction. Then a DMU-net was constructed by combining multi-scale aggregation with nested dense connection. The preprocessed datasets were then used to train and verify the DMU-net for predicting the results in 15 datasets with ROI extraction only. The mean of Dice index and Hausdorff distance obtained with the proposed method were 0.862 and 4.44 mm, respectively, which were better than those obtained with the conventional methods. Correlation coefficients of the endo-diastolic volume, endo-systolic volume, ejection fraction and stroke volume estimated were 0.992, 0.960, 0.987 and 0.982, respectively. The results demonstrated that the segmentation method based on the DMU-net has better relevance and consistency compared to manual segmentation, providing a promising tool the diagnosis of cardiac diseases.
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Complexation Analysis of Water-Soluble Phosphate Salt Pillar[5]arene with Acridine Orange
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BAO Qiu-lian, YANG Yun-han, WEI Ke-ke, LUO Jian-ping, GU Jie, LU Jia-jia, YANG Li-juan
Chinese Journal of Magnetic Resonance, 2020, 37(4): 469-483.
DOI: 10.11938/cjmr20202802
The host-guest complex of water-soluble phosphate salt pillar[5]arene (PP5A) and cationic fluorescent dye acridine orange (AO) was constructed, and studied with ultraviolet spectrum (UV), infrared absorption spectrum (IR), molecular fluorescence spectroscopy (MFS), and nuclear magnetic resonance (NMR) spectra (1 H NMR and NOESY). And then, the effect of pH and two surfactants, including sodium dodecyl sulfate (SDS) and cetyltrimethylammonium bromide (CTAB) on the fluorescence intensity of AO/PP5A complex system were investigated. Finally, the complexation mode and energy of PP5A with AO and CTAB were calculated by molecular docking. The results showed that AO and PP5A formed a 1:1 host-guest complex. PP5A reduced or quenched the fluorescence intensity of AO in the pH range of 3~11. The addition of SDS and CTAB did not affect the fluorescence intensity of AO/PP5A complex significantly. The fluorescence changes generated by AO and PP5A complexation can provide a theoretical basis for the design of fluorescence sensors.
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Assignments of NMR Spectral Data of a Novel Carbazole-Triazinoindole Based N -Acylhydrazone Derivative
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LI Ying-jun, YANG Hong-jing, LIU Ji-hong, JIN Kun, LIN Le-di, LIU Xue-jie
Chinese Journal of Magnetic Resonance, 2020, 37(4): 496-504.
DOI: 10.11938/cjmr20202803
N -acylhydrazone compounds have two isomers, E /cis and E /trans , in polar solvents. In this work, 1 H and 13 C nuclear magnetic resonance (NMR) signals, coupling constants (J ), and the spatial structures of the two isomers (E /cis and E /trans ) of a novel carbazole-triazinoindole based N -acylhydrazone derivative 3 , 2-(5H -[1,2,4] triazine[5,6-b ]indol-3-ylthio)-N '-(9-ethylcarbazol-3-ylmethylene)acetylhydrazine, were obtained by one-dimensional and two-dimensional NMR techniques, infrared spectroscopy (IR) and elemental analysis. The ratios of the two isomers were determined.
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An NMR Study of Chiral Glucopyranosyl-Based N -Heterocyclic Carbene-Palladium(II)-Pyridine Complex
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ZHOU Zhong-gao, XIE Qian, YUAN Yang-yang, LI Jing, LU Dong-liang, CHEN Zheng-wang
Chinese Journal of Magnetic Resonance, 2020, 37(4): 505-514.
DOI: 10.11938/cjmr20202806
A new air-stable and easy-to-handle 1-(2,3,4,6-tetra-O-acetyl-β -D-glucopyranosyl)-3-butyl-imidazol-2-ylidene] Pd(pyridine)Br2 (complex 2 ) was synthesized from the imidazolium halide salts 1-(2,3,4,6-tetra-O-acetyl-β -D-glucopyranosyl)-3-butyl-midazolium bromide (compound 1 ) by reaction with Pd(OAc)2 in pyridine. Complex 2 contains multiple chiral centers on the sugar ring. The molecular structures of complex 2 were determined with elemental analysis and liquid-state nuclear magnetic resonance (NMR) spectra. 1 H and 13 C chemical shifts of complex 2 were fully assigned. It was found that the effects of the carbon and proton chemical environment on the sugar ring is more obvious than that on the butyl chain after formation of N -heterocyclic carbene-palladium(II)-pyridine (NHCs-Pd(II)-Py)-metal bond in the presence of multiple weakly coordinated oxygen.