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Chinese Journal of
Magnetic Resonance
(Quarterly, Started in 1983)
Editor-in-Chief: LIU Mai-li
Sponsored by
Wuhan Institute of Physics and Mathematics, CAS
Published by Science Press, China
Distribution Code: 38-313
Pricing: ¥ 80.00 per year
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       Volume 32 Issue 1, 05 March 2015 Previous Issue   Next Issue
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    Vol.32 No.1 CONTENTS   Collect
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 0-0.  
    Abstract     HTML   PDF(430KB)
    Methods for Identification and Characterization of Protein Unexpectedly Expressed in Escherichia Coli: A Case Study Involving b-Lactamase Observed during the Expression of Zinc Finger 2-8 of NRSF/REST   Collect
    ZHANG Yan,ZHAO Bin,YANG Zhong-zheng,SHEN Jie,HU Wei,LAN Wen-xian,WU Hou-ming,CAO Chun-yang
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 1-11.   DOI: 10.11938/cjmr20150101
    Abstract     HTML ( )   PDF(578KB)

    Escherichia coli (E. coli) is often used to produce recombinant proteins rapidly with high yield. However, the bacteria expresses non-target proteins unexpectedly in many cases, some of which may later be proven useful. Full characterization of these unpredicted proteins are usually expensive and time-consuming. In this study, we used E. coli to express neuron- restrictive silencer factor/RE1-silencing transcription factor (NRSF/REST) functional motif ZnF2-8, which is involved in the interaction of NRSF/REST with neuron-restrictive silencer element (NRSE/RE1) dsDNA or small non-coding dsRNA for neuron gene transcriptional repression or activation. Overexpression of a non-target protein was observed. Two-dimensional 1H-15N HSQC NMR spectroscopy, X-ray crystallography and other biochemical assays were used in combination to characterize the non-target protein to be b-lactamase.

    Segmental Motion of PEO8∶NaPF6 Crystalline Polymer Electrolyte   Collect
    LUO Huan1,2,LIANG Xin-miao1,2,FENG Ji-wen1,Wang Li-ying1
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 12-22.   DOI: 10.11938/cjmr20150102
    Abstract     HTML ( )   PDF(427KB)

    Solid-state NMR spectroscopy was used to study the segmental motion of high-crystallinity PEO8∶NaPF6 electrolytes with different PEO molecular weights (Mw =1 000 and 6 000 g/mol, respectively). 13C-magic angle spinning (MAS) NMR spectra and static powder patterns, as well as static 2D exchange spectra, revealed that large-angle reorientation of the crystalline PEO segments in both PEO8∶NaPF6 complexes starts at a very low temperature (~243 K), similar to the case in pure crystalline PEO. At higher temperature, long-range reorientation gives rise to a well-defined high-temperature powder pattern of uniaxial chemical shift anisotropy (δ33δ22δ11), perhaps as the result of flipping of PEO. In contrast to other PEO/Na (Li) solid electrolytes, the segments in crystalline PEO8∶NaPF6 are highly mobile even when coordinated with Na+, and this is comparable with PEO. It is suggested that the segmental motion in crystalline PEO8∶NaPF6 electrolyte can enhance ion transportation along the coil, improving ionic conductivity.

    Solid-State NMR Studies on the Structure and Confined Segmental Dynamics of PMMA Nanocomposite   Collect
    LIU Yuan,CHEN Sheng-li,WU Qiang,CHEN Tie-hong,SUN Ping-chuan
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 23-32.   DOI: 10.11938/cjmr20150103
    Abstract     HTML ( )   PDF(376KB)

    Solid-state NMR techniques were used to study the structure and confined dynamics of poly-methyl methacrylate (PMMA)/laponite nanocomposite. 1H magic angle spinning (MAS) spectra and relaxation experiments indicate that organic modifiers (AIBA) interact strongly with laponite nano-sheets, and the structure of PMMA nanocomposite is homogenous at the scale of several nanometers. The results of 13C spin-lattice relaxation times (T1,C) experiments indicate that mobility of the PMMA segments, especially the carbonyl groups, in nanocomposite decreases under the confinement of laponite nano-sheets. 13C SUPER experiments further indicate that the incorporation of laponite induce a slight change of the CSA line shape of PMMA carbonyl groups.

    Salt Content-Dependent Conformational Changes of α-Synuclein Studied by 19F NMR   Collect
    DAI Chen-ye1,2,LIU Mai-li1,LI Cong-gang1
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 33-40.   DOI: 10.11938/cjmr20150104
    Abstract     HTML ( )   PDF(417KB)

    α-synuclein is an intrinsically disordered protein, and is implicated in Parkinson's disease. Previous studies have found that the aggregation rate, fibril structure, propagation and cytotoxicity of α-synuclein change markedly with salt concentration. However, the underlying molecular mechanisms remain poorly understood. In this work, 3-fluorotyrosine (3FY) labeling was introduced into α-synuclein, and the conformational changes of the protein under different salt concentrations were studied by 19F NMR. It was found that the protein was more compact at low salt concentration than at high salt
    concentration; and such conformational changes may account for the fibril morphology diversity and physiological effects of the protein at different salt concentrations. It was also concluded that 19F NMR is a sensitive technique to measure conformational change of intrinsically disordered protein.

    Spike Noise Removal for Magnetic Resonance Imaging Based on Sparse Reconstruction   Collect
    LI Zhi-min1,XIE Hai-bin1,ZHOU Min-xiong1,ZHANG Cheng-xiu2,XI Wei2,JIANG Xiao-ping2,YANG Guang1
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 40-50.   DOI: 10.11938/cjmr20150105
    Abstract     HTML ( )   PDF(344KB)

    It is well-known that, in magnetic resonance imaging (MRI), the presence of spike noise in the K-space will degrade the quality of reconstructed images. In this work, we proposed a method to remove spike noises based on the non-linear conjugate gradient (NLCG) reconstruction algorithm of compressed sensing (CS). The traditional CG algorithm reconstructs images in the wave-domain, making it difficult to remove spike noises. The proposed algorithm is a partial K-space reconstruction algorithm. Using image sparsity as a restrain, the algorithm reconstructs only the data which is covered by spike noises. Compared with the interpolation and NLCG algorithm, the proposed algorithm was shown to yield better images with less artifacts without the need to know the accurate localization of the spike noises.

    Distortionless Quantitative 13C DEPT++ Experiment   Collect
    LI Yun-yan1,2,SUN Peng1,2,LIU Mai-li1,ZHANG Xu1*,LIU Chao-yang1
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 51-58.   DOI: 10.11938/cjmr20150106
    Abstract     HTML ( )   PDF(293KB)

    Polarization transfer 13C NMR techniques, such as DEPT and its modified versions (i.e., DEPT++, Q-DEPT and Q-DEPT+), are frequently used in the analysis of complex mixture, given its high sensitivity and resolution. However, the practical use of quantitative DEPT experiments are often hampered by spectral distortions, which makes accurate quantification difficult. In this study, we incorporated elements of the Q-DEPT sequence into the DEPT++ pulse sequence, with the aim to eliminate spectral distortions in Q-DEPT+. The polarization transfer mechanisms underlying DEPT++ were analyzed. It was
    found that it is possible to obtain distortionless spectrum in quantitative DEPT++ experiment simply by calibrating the flip angle of the read pulse.

    A New DEPT Spectral Editing Method   Collect
    JIN Ya-ying,CHEN Zhi-wei
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 59-66.   DOI: 10.11938/cjmr20150107
    Abstract     HTML ( )   PDF(234KB)

    This paper presents a new DEPT spectral editing method. Multivariate linear regression was used to analyze the spectra and calculate the best fitting coefficients. The obtained fitting results were then used to calculate DEPT subspectra, yielding separated CH3, CH2 and CH signals. The new spectral editing method was shown to perform well on DEPT spectra, especially the complex ones.

    L1-Norm Support Vector Machine and Its Application in Metabonomics   Collect
    DING Guo-hui1,2,4,SUN Jian-qiang1,2,4,WU Jun-fang1,2,3,HUANG Shen1,2,4,DING Yi-ming1,2
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 67-77.   DOI: 10.11938/cjmr20150108
    Abstract     HTML ( )   PDF(339KB)

    Metabonomics analyzes metabolite profiles in living systems and its dynamic responses to changes of endogenous (i.e., physiology and development) and exogenous(i.e., environment and xenobiotics) factors. Pattern recognition plays an important role in data-processing in metabonomic. L1-norm support vector machine (L1-norm SVM) is an accurate and robust method in pattern recognition, but not widely used in metabonomics. In this study, we used L1-norm SVM to analyze metabonomic data obtained from mice infected by schistosomiasis. It was shown that L1-norm SVM had better performance than
    orthogonal partial least squares (O-PLS) in terms of clustering and feature selection. The results also showed that support vector machines have great potential and prospects for data-processing in metabonomics.

    A Control Technology for Gradient Amplifier Based on Multi-Frequency Shift   Collect
    HU Hong-bing,WANG Yan-long,ZHAO Hong-ju
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 78-86.   DOI: 10.11938/cjmr20150109
    Abstract     HTML ( )   PDF(524KB)

    Based on multi-frequency shift, a novel technology was proposed for controlling gradient amplifier in magnetic resonance imaging. Phase-locked-loop (PLL) circuit was used to achieve phase shift, and insulated-gate bipolar transistor (IGBT) full-bridge to achieve parallel output current and output power inductor. An output negative feedback system and average current control on every bridge were used to achieve high power, low ripple and low noise current output for the amplifier. The technology was validated on a custom-made gradient amplifier.

    Structural Elucidation of D-Camphor and β-Cyclodextrin Inclusion Complex   Collect
    ZHU Qing-ying*,HE Pei-zhi
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 87-94.   DOI: 10.11938/cjmr20150110
    Abstract     HTML ( )   PDF(386KB)

    Inclusion complex of β-cyclodextrin (β-CD) and D-camphor was prepared from saturated solution with stirring. The stoichiometric ratio of the inclusion complex was found to be 1∶1, as indicated by the 1H NMR results. XRD and FTIR spectroscopy was used to probe the intermolecular interactions between D-camphor and β-CD. 1H ROESY NMR results showed that the bicyclo[2.2.1]-2-heptanone of D-camphor was located in the cavity of β-CD, and its methyl group was partially outside. Quantum chemical calculation was used to obtain minimized binding energy and optimized structure, suggesting the
    presence of hydrogen bonding.

    Stereochemistry and Spectral Assignment of Thebaine Derivatives: A 1D NOESY NMR Study   Collect
    JIANG Dan1*,XU Jia2
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 95-104.   DOI: 10.11938/cjmr20150111
    Abstract     HTML ( )   PDF(272KB)

    Using analgesic dihydroetophine (compound 1) as the example, the stereochemical structures of thebaine derivatives were studied by NMR spectroscopy.
    Multiple-frequency selective excitation double pulsed field gradient spin echo 1D NOESY experiments in combination with 2D NMR techniques were used to assign the severely overlapped 1H and 13C resonances from compound 1. According to results of 1D NOESY experiments and the coupling constants measured, the conformational property and C-7 configuration of compound 1 in deuteriochloroform solution were elucidated.

    A Two-Dimensional NMR Study on Steroid Glycosides Extracted from Trillium tschonoskii   Collect
    CHAI Jiang1,WANG Xin3,LI Hui-min4,ZHANG Xin1,YANG Fang1,TANG Zhi-shu1,SONG Xiao-mei1,PEI Yue-hu4,MEI Qi-bing2,YUE Zheng-gang1,2
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 105-115.   DOI: 10.11938/cjmr20150112
    Abstract     HTML ( )   PDF(356KB)

    (25S)-27-hydroxypenogenin-3β-O-α-L-rhamnopyranosyl-(1→4)-[O-α-L-rhamnopyranosyl-(1→2)]-O-β-D-glucopyranoside (1) and polyphylloside III (2) were isolated from Trillium tschonoskii by column chromatography. One-dimensional and two-dimensional NMR techniques, including 1H NMR, 13C NMR, DEPT, HSQC, HMBC and 1H-1H COSY, were used to elucidate the structures of these compounds. 13C NMR and 1H NMR chemical shifts of the two compounds were completely assigned.

    Synthesis of 1-Hydroxyethylidene-1,1-Diphosphonic Acid (HEDP) Monitored by 31P NMR   Collect
    DU Cheng-tang*,ZHUANG Dong-qing,SHI Bo
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 116-122.   DOI: 10.11938/cjmr20150113
    Abstract     HTML ( )   PDF(218KB)

    In this paper, we report the use of 31P NMR to monitor the synthesis process of 1-hydroxyethylidene-1,1-diphosphonic acid (HEDP). 31P NMR was used to detect signals from the residues of key intermediates phosphorous acid and 3. The synthesis process was optimized based on the 31P NMR results. Impurity such as PCl3 were analyzed.

    Heating of Biological Samples in Studies of MAS Solid-State NMR   Collect
    TANG Xin-qi1,2,ZHANG Zheng-feng1,YANG Jun1*
    Chinese Journal of Magnetic Resonance, 2015, 32(1): 123-140.   DOI: 10.11938/cjmr20150114
    Abstract     HTML ( )   PDF(563KB)

    Magic-angle-spinning (MAS) solid-state NMR studies of biomolecules involve application of rapid sample rotation and radiofrequency pulsing, both of which can increase the sample temperature significantly, causing distorted spectra, sample dehydration and even sample degradation. In this review, the mechanisms leading to bio-sample heating in MAS solid-state NMR experiments are first introduced. The importance of sample temperature monitoring is then emphasized. Finally, we present the methods that can be used to to alleviate the problem, including optimization of sample preparation, selecting
    optimal NMR parameters, and improving NMR spectrometer hardware such as the probes.