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Solid-State NMR Studies on Amyloid Fibrils: Recent Progresses
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ZHANG Zheng-feng1,2, YANG Jun1*
Chinese Journal of Magnetic Resonance, 2013, 30(2): 157-174.
Amyloid fibrils are fibriform aggregates of amyloid proteins, which are implicated in many protein deposition diseases. Knowing the structures of amyloid fibrils will shed light on the molecular mechanism of fibrillation, facilitating the prevention and therapy of related diseases. Solid-state NMR is the most prospective technique for elucidating the structures of amyloid fibrils, since they are insoluble and non-crystalline such that they are difficult to be studied by liquid-state NMR and X-ray diffraction approaches. In this paper, recent progresses on using solid-state NMR methods to elucidate structural information of proteins, especially amyloid fibrils, are reviewed.
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NMR Structure of Fusion Peptide of the Helicoverpa Armigera Single Nucleocapsid Nucleopolyhedrovirus F Protein at pH 7.0
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ZENG Dan-yun1,2, DU Tian-peng1,2, JIANG Ling1*, LIU Mai-li1
Chinese Journal of Magnetic Resonance, 2013, 30(2): 175-182.
Fusion between viral and cellular membranes is an essential process for enveloped viruses to enter into cells. This process is usually mediated by fusion proteins on the surfaces of viral membranes. When pH changes from 7.0 to 5.0, the fusion proteins transform and expose their fusion peptide to anchor the cellular membrane and induce the subsequent fusion process. Ha133 (HaF) is the fusion protein of baculoviruse Helicoverpa armigera Single Nucleocapsid Nucleopolyhedrovirus (HearNPV). Its fusion peptide is composed of 20 residues, and located at the N-terminus of the F1 subunit. In this study, NMR methods were used to determine the solution structure of the fusion peptide in a membrane-mimicking environment at pH 7.0. It was found that the structure of the fusion peptide is composed of a 310 -helix from V7 to S9 , a turn at V10 , a regular α-helix from D11 to G16 and two flexible coils at the N- and C-terminus. Comparing this structure to the available structure of this fusion peptide at pH 5.0, it is noted that, with decreasing pH, the conformation of the fusion peptide alters to be more stable and to have a more complete amphiphilic surface. These results should allow us to further investigate the mechanism of membrane fusion.
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An Edge Enhancing Scheme for Non-Local Means Denoised MR Images
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YAN Xu, ZHOU Min-Xiong, XU Ling, LIU Wei, YANG Guang*
Chinese Journal of Magnetic Resonance, 2013, 30(2): 183-193.
Non-Local Means (NLM) is an excellent filter for noise removal and has been applied successfully to MR images. However, just like every other denoising filters, it inevitably blurs fine structures in images to certain extent. In this paper, we propose to combine high frequency components (HFC) extracted from the original image with the NLM-denoised image to recover the lost details. High frequency components, which contain rich edge information, are extracted with a multiresolution method based on Laplacian Pyramid. Then the HFCs are combined with the image denoised by NLM using a continuous edge map produced by an edge detector which is based on SUSAN operator and modified to be more robust to noises. The experiment showed that the proposed scheme achieved good suppression of noise in smooth regions while preserves or even enhances image details. Furthermore, images were enhanced subtly without artifacts that are typical in enhanced images.
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Selective Dual-Direction Sequential Compressed Sensing for Dynamic MR Imaging
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GAO Ming-sheng, XIE Hai-bin,YAN Xu, ZHOU Min-xiong, LI Zhi-min, YANG Guang*
Chinese Journal of Magnetic Resonance, 2013, 30(2): 194-203.
Compressed sensing (CS) is a new technique for reconstructing image from undersampled k -space data. In dynamic imaging, data sparsity can be introduced by applying Fourier transformation along the temporal dimension or calculating difference images with respect to a reference frame. In this work, a selective dualdirection sequential CS method was proposed to achieve greater data sparsity in dynamic MR imaging, by calculating difference images between adjacent frames. Both time sequential or inversed time sequential reconstruction were used for better reconstruction results, while the total computation time remained the same. Experimental results demonstrated that the proposed algorithm showed improved quality relative to the traditional compressed sensing algorithm, differencing algorithm and keyhole imaging technology.
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NMR Studies of Streptozotocin Effects on Rat Plasma Fatty Acids
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XU Wen-xin1,2, AN Yan-peng1,2, TANG Hui-ru1*
Chinese Journal of Magnetic Resonance, 2013, 30(2): 204-212.
Lipid metabolic dysfunction is a well-accepted risk factor of diabetic complications. Cardiovascular complications of diabetes are the leading cause of diabetic death. In this work, the dynamic changes in plasma levels of unsaturated fatty acids (UFAs) were measured, using diffusion-edited 1 H NMR spectroscopy, in a rat model of streptozotocin (STZ)-induced type 1 diabetes. The results showed that STZ treatment induced elevated UFAs and monounsaturated fatty acids levels in the plasma, and the dynamic changes of fatty acid ratios correlated well with the progression of diabetes. It was proposed that plasma levels of UFAs might be more sensitive indicators for development of type 1 diabetes than clinical lipid screening indices, such as triglyceride (TG) and high-density lipoprotein (HDL) levels.
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Detection of Liver Fibrosis Using Magnetic Resonance Elastography
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WANG Hong-zhi1,2,5*, LIU Xiang1, WANG He3, CHEN Shan-shan1,5, HUANG Qing-ming1,5, WANG Xiao-yan4, LU Lun4, HUANG Yong1,5, CHENG Hong-yan4, LI Geng-ying2, ZHANG Xue-long1,5
Chinese Journal of Magnetic Resonance, 2013, 30(2): 213-226.
Magnetic resonance elastography can be used to measure the elastic stress of the liver and the extent of hepatic fibrosis quantitatively. This paper describes the principles and practical implementation of magnetic resonance elastography, including tissue biomechanical model analysis, development of the shear wave developing stimulator, design of elastic imaging sequence and fitting algorithms for elastography. Magnetic resonance elastography measurements on ex vivo pork liver and human volunteers were demonstrated experimentally.
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NMR Spectroscopic Characterization of 2-Aryloxymethyl-1H- benzimidazole Acetic Acid Hydrazides
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LI Ying-jun*, LUO Tong-chuan, XU Yong-ting, LIU Li-jun, YU Yang, SHAO Xin
Chinese Journal of Magnetic Resonance, 2013, 30(2): 233-246.
Eight 2-aryloxymethyl-1H- benzimidazole acetic acid hydrazides (4 ) have been synthesized by hydrazinolysis of the corresponding esters 3 . Among them, the compounds 4c , 4 d, 4f and 4g are new. The structures of the target compounds 4 were characterized by elemental analysis, IR and 1 H NMR. 1 H and 13 C NMR signals assignments and spatial structure of representative compound 4e are confirmed by its two-dimensional (1 H-1 H COSY, HSQC, HMBC and NOESY) NMR spectra. The tautomerism of compound 4e were studied by the variable-temperature experiment and solvent experiment (DMSO-d 6 and CDCl3 ). The experimental results indicate that the target compounds 4 in DMSO at room temperature exist in the tautomeric keto and imine enol forms, and the dominant keto form isomer consists 88.2%~92.6%, while the imine enol form is the only structure in CDCl3 at room temperature.
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NMR Characterization of Two Monoterpene Glycosides Isolated from Boschniakia rossica Fedtsch et Flerov
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WU Chun-hua1, LI Chun-mei1, CHEN Feng2, YOSHIHIRO Yamaguchi2, DENG Shen1, WANG Tao1, ZHANG Yi1*
Chinese Journal of Magnetic Resonance, 2013, 30(2): 247-255.
Two compounds were isolated from the 75% EtOH extract of Boschniakia rossica Fedtsch et Flerov. The compounds were characterized as β -D-glucopyranose 1-(3,7-dimethyl-2-trans -6-octadienoate) (1 ) and 6,7-dihydrofoliamenthoic acid diglucoside (2 ) by 1 H and 13 C NMR and 2D NMR techniques (i.e., 1 H-1 H COSY, HSQC, HMBC, and NOESY). Compound 1 was found to be a new compound, while compound 2 was obtained from Orabanchaceae family for the first time.
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Synthesis and Multinuclear NMR Study on 2,6-Bis(trimethyltin)-4,8-bis(2-ethylhexyloxy)benzo[1,2-b :4,5-b´ ]dithiophene
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WANG Min-chang*,ZHANG Gao,XU Min,LIU Hong-li,LUAN Jie-yu,CHEN Zhi-qun,QI Zhu-chai
Chinese Journal of Magnetic Resonance, 2013, 30(2): 270-278.
2,6-Bis(trimethyltin)-4,8-bis(2-ethylhexyloxy)benzo[1,2-b :4,5-b ´]dithiophene, the monomer of a polymer solar cells material, was synthesized from 4,8-dihydrobenzo[1,2-b :4,5b ´]dithiophen-4,8-dione. The structure of the compound was determined by multinuclear NMR spectroscopy, including 1 H, 13 C, 119 Sn, 117 Sn NMR, DEPT, selective 1D TOCSY and 2D NMR techniques including 1 H-1 H COSY, gHSQC and gHMBC. The 1 H, 13 C, 119 Sn, 117 Sn NMR chemical shifts were assigned and the spectral features of the compound were discussed.