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A New Data Processing Method for Metabonomic and Its Application in a Study of Diabetes
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DONG Ji-yang1, XU Le1, CAO Hong-ting1, DAI Xiao-xia2, LI Xue-jun3, YANG Shu-yu3, CHEN Zhong1*
Chinese Journal of Magnetic Resonance, 2007, 24(4): 381-393.
Multivariate statistical methods are frequently used in nuclear magnetic resonance (NMR)-based metabonomic researches to analyze NMR spectra of biofluids. Based on the fact that the NMR spectrum of a given sample are a sum of the NMR signals from all constituting ingredients, we developed a nonnegative matrix factorization (NMF) method, capable of finding parts-based and linear representations of non-negative data, for analyzing the data acquired in NMR-based metabonomic studies. Detail comparisons were made between the NMF method and the commonly use principal component analysis (PCA) method by employing the two methods to discriminate the urine and serum spectra of type-2 diabetic patients from those of the healthy controls. It was shown that, compared to the PCA method, the NMF method is a more effective and accurate method for processing NMR spectra acquired in the metabonomic studies, partially due to its unique features such as the non-negative constraints and part-based representation. The disadvantages of the PCA method were also analyzed and discussed.
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Noninvasive Visualization of in Vivo Drug Delivery with MRI
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LI Jian-qi1, SHU Jie1, LUO Shu-fang2, YU Lei-2, DU Bing3, CHEN Qun1*
Chinese Journal of Magnetic Resonance, 2007, 24(4): 420-425.
Noninvasive visualization of in vivo delivery of liver specific non-ionic polymeric contrast agent in mice was studied with a 1.5 T clinical MRI scanner. Abdominal MR images were acquired immediately, 6, 12, 24, and 168 h (7 day) after injection of the contrast agents with a 3-inch diameter single-loop surface coil. Intensity non-uniformity correction and signal instability correction were performed before data analysis. The results showed that these corrections increased the data reliability and MRI was an effective method for noninvasive visualization of in vivo delivery of paramagnetically labeled polymer conjugates.
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A Digital Servo System for Rubidium Frequency Standards
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CAO Yuan-hong1,2, ZHANG Xian-yi1,2, KANG Song-bai1,2, ZHONG Da1, MEI Gang-hua1*
Chinese Journal of Magnetic Resonance, 2007, 24(4): 494-500.
Principles of synchronous phase detecting and digital servo for rubidium atomic frequency standards (RAFS) were discussed. A digital servo system for rubidium frequency standards was designed with microcontroller unit, ADC and DAC. Frequency locking of a RAFS using the servo system was realized. The resulting frequency stability reached the level of common commercial RAFS.
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Characterization of Acidity of Zeolites by NMR Probe Molecules:A Theoretical Investigation
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WU Zhong-qin1,2, ZHENG An-min1, YANG Jun1, DENG Feng1*
Chinese Journal of Magnetic Resonance, 2007, 24(4): 501-509.
In this contribution, trimethylphosphine oxide (TMPO), pyridine and trimethylphosphine (TMP) were selected as NMR probe molecules to study the acid strength of several industrially used zeolites (H-Y, H-ZSM5 and H-MOR) theoretically. The relationship between chemical shifts of these probe molecules and acid strength of zeolites was revealed. In the meanwhile, the applicability of probe molecules on the characterization of Bronsted acidity was discussed. Since the 1 H, 15 N and 31 P chemical shift ranges of adsorbed D5-pyridine and TMP on the Bronsted acid sites in zeolites were relatively very smaller (i.e., δ 18.2 ~ 18.7, δ -191.0~-186.9, δ -8.7~-3.5 for 1 H, 15 N and 31 P, respectively), they were only used to detect the existence of acidic protons in the zeolites. However, the 31 P chemical shift range of adsorbed TMPO ranges from δ 62.8 to δ 90.5, and it may be expected that the adsorbed TMPO were very sensitive to measure solid acid strengths of the zeolites catalysts, compared with the 31 P NMR of adsorbed TMPO.
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HR-MAS 1 H NMR Spectra of Rat Kidney Tissue Analyzed by Statistical Total Correlation Spectroscopy (STOCSY)
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LI Zhao1,2, ZHU Hang1,2,CHENG Peng1,2,ZHOU Zhi-ming1,2,LIU Mai-li1,ZHANG Xu1*
Chinese Journal of Magnetic Resonance, 2007, 24(4): 510-518.
Providing spectral resolution comparable to those of high resolution spectroscopy on tissue extracts, high resolution magic angle spinning (HR-MAS) NMR spectroscopy on intact tissue has been used widely in NMR-based metabonomic studies. In order to prevent enzymatic degradation and/or diffusion of metabolites, the HR-MAS NMR experiments are often performed at low temperature with a short acquisition time. Statistical total correlation spectroscopy (STOCSY) is a novel tool developed previously for NMR-based metabonomic studies. It takes advantage of the multicollinearity of the intensity variables in a set of 1 H NMR spectra to generate a pseudo-two-dimensional NMR spectrum, without needing extra acquisition time. In this paper, STOCSY was used to analyze HR-MAS 1 H spectra of rat kidney tissue. Pseudo 2D spectra were generated from a set of 1D HR-MAS NMR spectra and used to observe intramolecular correlations among the resonances. The STOCSY results are helpful in peak assignment.
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Quantum Chemical Investigation of the Structure and Chemical Shifts of AT1 Antagonists V8, V12 and BZI8
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ZHANG Hui-ting1,2*, WANG Lin1,2, WEI Jia1,2, HE Hong-qing1, YANG Ming-hui1
Chinese Journal of Magnetic Resonance, 2007, 24(4): 519-525.
Starting from the structures of Mavromoustakos´ molecular dynamics and Monte Carlo simulations, the equilibrium geometry structures and the vibrational frequencies of the SARTANS group AT1 antagonists V8, V12 and BZI8 were calculated at the B3LYP/6-31G(d) level, and the chemical shifts of the protons were calculated by B3LYP-GIAO method with the basis set of 6-311G(d, p). The computational results were found in reasonable agreement with the NMR experimental data of ROE and the 1 H spectrum. Few differences were found between the structures of Mavromoustakos´s and ours´. It is postulated that both the structures obtained are reasonable. With superimposition of the optimized structure, there is similarity in the biphenyl imidazole rings of the three molecules belonging to SARTANS group.