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Chinese Journal of
Magnetic Resonance
(Quarterly, Started in 1983)
Editor-in-Chief: LIU Mai-li
Sponsored by
Wuhan Institute of Physics and Mathematics, CAS
Published by Science Press, China
Distribution Code: 38-313
Pricing: ¥ 80.00 per year
Current Issue
       Volume 25 Issue 2, 05 June 2008 Previous Issue   Next Issue
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    contents

    NMR- Approaches for Probing Fast Time Scale Dynamics of Protein Side Chains

      Collect
    CHENG Peng; ZHOU Zhi-ming; LI Zhao; LIU Mai-li; ZHANG Xu
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 145-158.  
    Abstract     HTML ( )   PDF(521KB)

    Dynamic aspects of proteins are increasingly recognized as being important for describing their biological functions such as protein-protein and protein-drug interactions. Consequently, considerable efforts have been made to characterize protein dynamic motions. Among these methods, nuclear magnetic resonance (NMR), in particular, is capable of providing valuable information on the nature of internal motions of proteins in solution. In this review, the NMR-based approaches for studying protein side chain dynamics are reviewed, with emphasis on those methods for probing fast time scale internal motions.

    A Study on the Cross-Polarization Kinetics of Polyethylene Crystals   Collect
    LIU Zhi-jian; SHU Jie; ZHANG Li-li; CHEN Qun
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 159-164.  
    Abstract     HTML ( )   PDF(382KB)

    The kinetics of cross-polarization (CP) between 1H and 13C nuclei in the crystalline regions of elongated polyethylene fiber was studied. It was found that, with a moderate magic angle spinning (MAS) rate, the CP build-up curves of both orthorhombic and monoclinic crystals of PE can be described by I-I*-S- model. For the fiber sample aligning with the MAS axis in the rotor, the CP build-up curves of both orthorhombic and monoclinic crystals exhibit oscillation, while those of the disoriented samples exhibit monotonic increase. These results demonstrated that, to a certain extent, both orthorhombic and monocline crystals are oriented along the direction of elongation. The degree of orientation of the monoclinic crystal is higher than that of the orthorhombic crystal. Measurement of the kinetics of cross-polarization can be employed as a new technique to determine the degree of orientation of polymer chain.

    Solid-State NMR Investigation of PS-PB Block Copolymers   Collect
    FU Wei-gui; LI Bao-hui; LIN Hai; SUN Ping-chuan; DING Da-tong; JIN Qing-hua
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 165-175.  
    Abstract     HTML ( )   PDF(655KB)
    In this paper, we report quantitative determination of interphase thickness and domain size in poly (styrene)-block-poly (butadiene) and poly (styrene)-block-poly (butadine)-block-poly (styrene) copolymers (PS-PB and PS-PB-PS) by novel solid-state NMR methods developed recently in our group. It was found that the block copolymers having equal polystyrene (PS) weight fractions (32.5%) and different block structures have the same interphase thickness (ditp). These experimental results were in agreement with theoretical prediction of the interphase thickness in polymer blends made by Helfand using SCFT theory.
    Stereoregularity of Polyacrylonitrile Studied by High-Resolution 13C NMR Spectroscopy   Collect
    WANG Yu-song; PANG Wen-min; XU Guo-yong; WU Wei-tai; ZHU Qing-ren; LU Fei; XU Liang-hua
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 176-183.  
    Abstract     HTML ( )   PDF(397KB)
    High-resolution 13C NMR spectra of atactic polyacrylonitrile (PAN) and isotactic-rich PAN were obtained under optimized solution concentration and experimental temperature. Assignments of nitrile carbon atoms with heptads were obtained and shown to be different from previously reported. The methenyl carbon atoms with pentads and heptads were assigned, respectively. It was shown that the atactic PAN obeys Bernoullian statistics. First-order and second-order Markov statistics were applied to calculate the content of the n-ads in isotactic-rich PAN. The number-average lengths of the isotactic and syndiotactic sequences calculated by “block” statistics confirmed the assignments of the heptads by 13C NMR spectroscopy.
    Analysis of Sodium Aescinate Mixture by NMR Spectroscopy   Collect
    CHEN He-bing; LI Yu; ZHANG Qi; WU Sheng-ming; SUN Bo; YAN Xian-zhong
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 184-192.  
    Abstract     HTML ( )   PDF(416KB)
    Analysis of mixture is important in pharmaceutical studies, in which NMR can be a very useful method. In present study, the relative concentrations of aescin A, B, C and D in the mixture of sodium aescinate were determined with HPLC. 1H and 13C NMR characteristics of these compounds were analyzed using band-selective 2D constant-time HMBC and other 2D NMR methods. The high resolution provided by the band-selective constant-time 2D experiment made correct assignments of almost overlapped resonant peaks from compounds with similar structures possible. The results of this study suggest that selective 2D NMR techniques can be used to facilitate the analysis of mixture.
    Assignments of 1H and 13C NMR Chemical Shift of Chlorpromazine Hydrochloride and Structural Characterization   Collect

    JIANG Zheng-jing; WU Xiao-dong; WEI Xu; BEI Feng-li; YANG Xu-jie; WANG Xin; LU Lu-de

    Chinese Journal of Magnetic Resonance, 2008, 25(2): 193-203.  
    Abstract     HTML ( )   PDF(801KB)
    The hom-and heteronuclear correlation spectroscopy techniques were used to make unambiguous assignments of 1H and 13C chemical shifts of chlorpromazine hydrochloride (CPZ· HCl), a well-known psychotropic agent. By comparing of the completely assigned spectra of CPZ· HCl in different solvents (acetone-d6, chloroform-d and deuterium oxide), it was concluded that the aggregation state of CPZ· HCl differs drastically in different solutions. The data from NMR spectroscopy studies were combined with the results obtained by theoretical calculations to derive the side chain conformations of CPZ· HCl. It was shown that the side chains are in folded forms in acetone and chloroform solutions whereas they inclined to adopt an extended style in aqueous solution.
    Theoretical Calculation of 1H NMR Spectra of Sulfonylurea Herbicides   Collect
    LIU Xing-yan; LIAO Xian-wei; CHEN Guo-li; ZHANG Hong-mei; FAN Zhi-jin
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 211-216.  
    Abstract     HTML ( )   PDF(355KB)
    In this paper, the geometric configurations of eight derivatives of N(4′-mehylpyrimidine)-N-substitute-2-nitro-benzenesulfonylurea were optimized by theoretical calculations. The structures of these compounds were optimized by the HF method at the level of 6-31G(d) and their 1H NMR spectra were predicted by the B3LYP method at the level of 6-31G(d). It was shown that the results of theoretical calculation were consistent with the experimental results.
    NMR Studies of Lansoprazole and Tautomerism in Solution   Collect
    ZHANG Gao, WANG Min-chang, LIU Hong-ni, XU Min, QI Zhu-chai
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 217-227.  
    Abstract     HTML ( )   PDF(468KB)
    In this study, NMR techniques, including 1H NMR, 13C NMR, DEPT, 19F NMR, HSQC, and HMBC, were used in combination to assign the 1H and 13C chemical shifts of lansoprazole in room temperature. On the basis of the assignments and the results of variable-temperature experiments, a hypothesis was put forward to explain the existence of several low broad lines in the 1H and 13C NMR spectra of the compound. It was proposed that there exist two inter-converting tautomers at room temperature. The inter-conversion rate increased and the broad lines became narrower as the temperature increased, and vice versa. The low broad lines in the 1H spectra of the compound disappeared at -70 ℃, indicating the existence of only one tautomer and the termination of the inter-conversion process. The 1H spectra of lansoprazole obtained at -70 ℃ were assigned, which were shown to be consistent with the results obtained at in room temperature.
    Estimation and Prediction of 13C Chemical Shifts of Acridone Alkaloids: A Quantitative Structure-Spectrum Relationship   Collect
    HE Liu; MEI Hu; LI Zhi-liang
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 228-233.  
    Abstract     HTML ( )   PDF(374KB)
    A multiple linear regression model for calculating 13C chemical shifts in acridone alkaloids from the structural indices namely the atomic electronegative interaction (AEIV) vector and the atomic hybridation state index (AHSI) was established. 13C chemical shifts of 792 equivalent carbon atoms in 42 acridone alkaloids were calculated based on their AEIV and AHSI indices. The correlation coefficients and standard deviation of modeling estimation and leave-one-out cross-validation are 0.957, 0.956 and 12.247,12.331, respectively. An external prediction set was applied to validate the prediction capabilities of the model. The results show that both AEIV and AHSI are excellent topological indices with satisfactory estimation stability and favorable predictive ability.
    An MRI Image Denoising Algorithm Using Neural Network Analysis and Wavelet Transformation   Collect
    LIU Xiao-zheng;FU Cai-xia;YANG Guang
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 234-242.  
    Abstract     HTML ( )   PDF(967KB)
    Wavelet transformation has been widely used for image denoising. Different schemes of noise thresholding have been suggested. A good wavelet thresholding scheme should reflect the correct mapping of the wavelet coefficients of the noised images to that of clean images. In this study, we proposed a new method of image denoising, which utilizes neural networks to search the mapping relations in the wavelet domain. The method was applied to denoise MRI images and proven to be satisfactory in performance and insensitive to noisedistribution.
    A Digital Transmitter for NMR Based on FPGA   Collect
    CHEN Nan;CHEN Jie-hua;HU Peng;LIU Chao-yang;GAO Jun-yi
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 243-249.  
    Abstract     HTML ( )   PDF(600KB)
    This paper presents an FPGA-based design scheme of NMR digital orthogonal transmitter. Utilizing embedded blocks such as RAM and the resources of logic gate of the FPGA and based on ARM7 and other communication systems, the realized transmitter is shown to be able to provide accurate high speed pulsed output with FM, PM or AM. Synchronously controlling two pieces of DDS using the FPGA, the transmitter is able to provide orthogonal RF output. In addition, both of the signals in orthogonal output can be regulated independently. This flexible design can be conveniently extended to the design of multi-channel transmitter.
    Unified Explanation of the Optical Spectra and Paramagnetic g Factor of CaF2:Co2+   Collect
    XIE Lin-hua;ZHU Shi-fu
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 250-256.  
    Abstract     HTML ( )   PDF(370KB)
    Based on the semi-self-constant-field (semi-SCF) d-orbital model and the complete energy matrix diagonalization procedure (CDP), the optical spectra and g factor of CaF2:Co2+ were explained from the local structure of the impurities. The local structure was shown to have collapse effects, but remain an eight-coordinate cubic symmetry. In addition, the dependence of the g factor on the crystal splitting parameter Dq was discussed by the perturbation method (PTM) and CDP. The third order perturbation formula proposed by Macfarlane was shown to be a good approximation, but its validity became worse with decreasing Dq. At last, the applicability of the g formulae constructed on the basis of CDP and spin Hamiltonian theory, together with the difficulties in the case of orbital degeneration, were discussed.
    An NMR Study of α-Mangostin   Collect
    SUN Wei; WEI Yong-feng;BAI Yin-juan;WANG Ming-chang;SHI Zhen
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 257-264.  
    Abstract     HTML ( )   PDF(400KB)
    The fruit hull of mangosteen, Garcinia mangostana, has been used for many years as a medicine for treatment of skin infection, wounds and diarrhea. In the present study, 1D 1H NMR, 13C NMR, DEPT and 2D HMBC, HSQC, 1H-1H COSY, ROESY methods were used to identify the structure of 1, 3, 6-trihydroxy-7-methoxy-2, 8-bis-(3-methyl-2-butenyl)-9-xanthenone α-mangostin extracted from the fruit hull of mangosteen. The 1H and 13C chemical shifts of α-mangostin were assigned.
    Irradiation Effects on Chlorinated Polyethylene Studied by NMR Spectroscopy   Collect
    CHEN Chun-li;ZHAO Xin;SUN Wan-fu;TANG Jun
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 265-272.  
    Abstract     HTML ( )   PDF(406KB)
    Irradiation effects on chlorinated polyethylene (CPE) were studied by 1D and 2D NMR spectroscopy, measurements of proton spin-spin relaxation time (T2) and spin-lattice relaxation time (T1) and FT-IR. The results indicated that degradation reactions took place after CPE was irradiated by 60Co γ-rays. It was shown that HCl emitted during irradiation. The higher the absorbed doses was, the more HCl emitted. The quantity of some sequential structures (e.g., CH2CHClCHClCH2CHCl, CH2CH2CHClCH2CH2, CHClCH2CHClCH2CH2, and CHClCH2CHClCH2CHCl) of CPE were found reduced after irradiation, but there were no evidence indicating that new sequential structures were formed. The values of T1 and T2 also provided very important information about the segmental motion of the molecules.
    Methods for Calculating Pore Radius Distribution in Rock from NMR T2 Spectra   Collect
    LI Hai;ZHU Ju-yi;GUO He-kun
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 273-280.  
    Abstract     HTML ( )   PDF(405KB)
    Both NMR T2 spectra and mercury intrusion capillary pressure reflect pore structure of a rock, to a certain extent. Comparison and theoretical analyses of NMR T2 spectra and mercury intrusion pore-throat frequency distribution curve indicate significant correlation between these two sets of data, thus it is possible to calculate pore radius distribution from NMR T2 spectra. In this paper, several methods (e.g., interpolation arithmetics, methods based on least square principle and other mathematical methods) for converting NMR T2 spectra into pore radius distribution were evaluated and compared, using mercury intrusion pore-throat distribution data as a reference. Mercury intrusion saturation was considered to be an important factor that can influence the result of conversion. The practical applicability of the methods was tested using sandstone samples. The results suggested that it is necessary to emphasize the main sections of NMR T2 spectra and mercury intrusion pore-throat distribution, and consider the influence of inadequate mercury intrusion saturation in the conversion process. The conversion result was shown to be more reliable when both the factors were taken into consideration.
    Structure Determination of a Triterpene Saponin Extracted from the Barks of Pseudolarix kaempferi by 2D NMR   Collect
    YUE Zheng-gang;XIAO Kai;WU Li-jun;LIN Hong-wei;FAN Jun-wen;ZHAO Jie;LI Yue;ZHANG Li-ming
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 281-286.  
    Abstract     HTML ( )   PDF(302KB)
    A triterpene saponin was extracted from the barks of Pseudorix kaempferi for the first time,and determined to be dammar-24(25)-ene-3β, 6α, 12β, 20 (S)-tetraol-20-O-β-D-pyranoglucoside on the basis of NMR analysis. The chemical shifts of this compound were completely assigned using 2D NMR spectroscopy.
    Application of the NMR Techniques in Studies on Organic Matters in Soil   Collect
    WANG Jun-mei;OUYANG Jie;SHANG Qian;DENG Zhi-wei
    Chinese Journal of Magnetic Resonance, 2008, 25(2): 287-295.  
    Abstract     HTML ( )   PDF(528KB)
    Soil organic matters (SOM) are important components in soil, and they would affect the physicochemical, chemical and biological properties of the soil directly or indirectly. Many researchers and various advanced techniques have been involved in the investigation of SOM. As a powerful technique for organic analysis, NMR has played an important role in this field. In this paper, the analytical methods commonly used in agrology research were reviewed, and the NMR methods were discussed in detail.