波谱学杂志 ›› 1995, Vol. 12 ›› Issue (1): 29-38.

• 研究论文 • 上一篇    下一篇

核磁共振次级化学位移和蛋白质二级结构

胡红雨, 鲁子贤, 杜雨苍   

  1. 中国科学院上海生物化学研究所, 上海 200031
  • 收稿日期:1994-03-08 修回日期:1994-06-21 出版日期:1995-02-05 发布日期:2018-01-17

NMR SECONDARY CHEMICAL SHIFT AND PROTEIN SECONDARY STRUCTURE

Hu Hongyu, Lu Zixian, Du Yucang   

  1. Shanghai Institute of Biochemistry, The Chinese Academy of Sciences Shanghai 200031
  • Received:1994-03-08 Revised:1994-06-21 Online:1995-02-05 Published:2018-01-17

摘要: 蛋白质和多肽的空间结构导致NMR化学位移的变化.称为次级化学位移(△δ).采用已归属的化学位移数据.分析了肽链各残基αH、NH、13Ca13CO的次级化学位移值与其所处的二级结构的关系.α-螺旋结构中.同一残基的△δaH和△δNH波动相位相反;大多数α-螺旋片段的△δaH和△δNH的周期约为3.6残基.与α-螺旋周期一致;△δ11Ca和△δ13co也发现有同样周期性.β-折叠及其它结构中这些次级化学位移值不具备周期性.肽链氢键效应可能是造成次级化学位移规律变化的主要因素.

关键词: 次级化学位移, 二级结构, 周期性, 氢键效应

Abstract: An additive variation of NMR chemical shift related to conformation of protein and peptide is named secondary chemical shift (△δ). Based on the chemical shift data of residues, the relationship between chemical shift of αH. NH. 13Cα.13CO and the secondary structure has been surveyed. In most α-helical structures, the △δαH and △δNH of a residue show reverse phase variation and the periodicity of △δαH. and △δNH is ca.3.6 residues/Cycle, which is in accordance with that of a-helix. Furthermore, the periodic feature is also found in △δ11Ca and △δ13co in belieal segments. However, in the case of β-sheet and other structures, it does not imply this characteristic secondary chemical shift. The hydrogen bond effect among peptide chain probably caused the periodic variation of the secondary chemical shift is also discussed.

Key words: Secondary chemical shift, Secondary structure, Periodicity, Hydrogen bond effect